Here below are 15 core Bioinformatics and Computational Biology topics across five parts. Choose Easy, Medium or Difficult for each topic to practise 15 questions per level. Answers show the correct option and explanation immediately.
Part 1: Topics 1–3
1. Biological Databases
2. Sequence Formats and Retrieval
3. Pairwise Sequence Alignment
Part 2: Topics 4–6
4. Scoring Matrices and BLAST
5. Multiple Sequence Alignment
6. Phylogenetic Analysis
Part 3: Topics 7–9
7. Genome Assembly and Annotation
8. Next-Generation Sequencing
9. Transcriptomics and RNA-seq
Part 4: Topics 10–12
10. Proteomics and Mass Spectrometry
11. Protein Structure Prediction
12. Molecular Docking
Part 5: Topics 13–15
13. Systems Biology and Networks
14. Biostatistics for Bioinformatics
15. Machine Learning in Bioinformatics
Frequently Asked Questions
What is the difference between global and local sequence alignment?
Global alignment attempts to align sequences end to end; local alignment identifies the highest-scoring matching subsequences.
What does an E-value represent in a BLAST result?
It estimates the number of alignments with an equivalent or better score expected by chance under the search model.
Why are substitution matrices used in protein alignment?
They score amino acid substitutions based on evolutionary or empirical patterns of similarity.
How does a FASTA file differ from a FASTQ file?
FASTA stores sequence identifiers and sequences; FASTQ additionally stores per-base quality scores.
What is the difference between sensitivity and specificity in a classifier?
Sensitivity measures detection of true positives; specificity measures correct identification of true negatives.